Publications

  1. "Quantifying functional redundancy and selection in microbial communities."
    Ho P and Huang KC.
    (submitted)

  2. "Resource competition predicts assembly of gut bacterial communities in vitro."
    Ho P*, Nguyen TH*, Sanchez JM, DeFelice BC, and Huang KC.
    Nature Microbiology (2024).

  3. "Modulation of antibiotic effects on microbial communities by resource competition."
    Daniel Newton, Po-Yi Ho, and Huang KC.
    Nature Communications, 14:2398 (2023).

  4. "Design, construction, and in vivo augmentation of a complex gut microbiome."
    Cheng AG*, Ho P*, Aranda-Díaz A*, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.
    Cell, 185:3617-3636 (2022).

  5. "Competition for fluctuating resources reproduces statistics of species abundance over time across wide-ranging microbiotas."
    Ho P, Good BH, and Huang KC.
    eLife, 11:e75168 (2022).

  6. "A mechanistic model for the regulation of cell division timing by the circadian clock in cyanobacteria."
    Ho P, Martins BMC, and Amir A.
    Biophysical Journal, 118:2905-2913 (2020).

  7. "Modeling cell size regulation: From single-cell level statistics to molecular mechanisms and population level effects."
    Ho P, Lin J, and Amir A.
    Annual Review of Biophysics, 47:251-271 (2018).

  8. "Archaeal cells share common size control with bacteria despite noisier growth and division."
    Eun Y, Ho P, Kim M, LaRussa S, Robert L, Renner LD, Schmid A, Garner E, and Amir A.
    Nature Microbiology, 3:148-154 (2018).

  9. "A parallel adder coordinates mycobacterial cell-cycle progression and cell-size homeostasis in the context of asymmetric growth and organization."
    Logsdon MM, Ho P, Papavinasasundaram K, Richardson K, Cokol M, Sassetti CM, Amir A, and Aldridge BB.
    Current Biology, 27:3367-3374 (2017).

  10. "Details matter: noise and model structure set the relationship between cell size and cell cycle timing."
    Barber F, Ho P, Murray AW, and Amir A.
    Frontiers in Cell and Developmental Biology, 5:92 (2017).

  11. "Interrogating the Escherichia coli cell cycle by cell dimension perturbations."
    Zheng H, Ho P, Jiang M, Tang B, Liu W, Li D, Yu X, Kleckner NE, Amir A, and Liu C.
    Proceedings of the National Academy of Sciences, 113:15000-15005 (2016).

  12. "Simultaneous regulation of cell size and chromosome replication in bacteria."
    Ho P and Amir A.
    Frontiers in Microbiology, 6:662 (2015).

  13. "Calibrated Langevin-dynamics simulations of intrinsically disordered proteins."
    Smith WW, Ho P and O'Hern CS.
    Physical Review E, 90:042709 (2014).