Selected Publications

Complete list at Google Scholar

  1. "Challenges in interpreting functional redundancy and quantifying functional selection in microbial communities."
    Ho P and Huang KC.
    Cell Systems, in press.

  2. "Resource competition predicts assembly of gut bacterial communities in vitro."
    Ho P*†, Nguyen TH*, Sanchez JM, DeFelice BC, and Huang KC†.
    Nature Microbiology, 9:1036-1048 (2024).

  3. "Modulation of antibiotic effects on microbial communities by resource competition."
    Daniel Newton, Po-Yi Ho†, and Huang KC†.
    Nature Communications, 14:2398 (2023).

  4. "Design, construction, and in vivo augmentation of a complex gut microbiome."
    Cheng AG*†, Ho P*, Aranda-Díaz A*, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC†, Fischbach MA†.
    Cell, 185:3617-3636 (2022).

  5. "Competition for fluctuating resources reproduces statistics of species abundance over time across wide-ranging microbiotas."
    Ho P, Good BH†, and Huang KC†.
    eLife, 11:e75168 (2022).

  6. "A mechanistic model for the regulation of cell division timing by the circadian clock in cyanobacteria."
    Ho P, Martins BMC, and Amir A.
    Biophysical Journal, 118:2905-2913 (2020).

  7. "Modeling cell size regulation: From single-cell level statistics to molecular mechanisms and population level effects."
    Ho P, Lin J, and Amir A.
    Annual Review of Biophysics, 47:251-271 (2018).